Rosenberg lab at Stanford University

CLUMPP download

The software is for Windows, Linux, or Mac.

[Download CLUMPP 1.1.2 for Linux 64-bit (includes the manual) ]
[Download CLUMPP 1.1.2 for Linux 32-bit (includes the manual)]
[Download CLUMPP 1.1.2 for Mac (includes the manual)]
[Download CLUMPP 1.1.2b for Windows (includes the manual)]
[Download manual 1.1.2]
[Download software note (Bioinformatics 23: 1801-1806)]

Winzip will unzip the Windows version. To use the program in Linux, unzip and untar the files in an appropriate directory using

gunzip CLUMPP.tar.gz; tar xvf CLUMPP.tar

Please send comments or problems with CLUMPP to Mattias Jakobsson.


New in version 1.1.2b (a change for Windows only), posted June 18, 2010

-When double-clicking on the CLUMPP executable in Windows, the command window will no longer close after the program finishes. This feature did not work properly in version 1.1.2.

New in version 1.1.2, posted June 5, 2009

-BUG FIX. Seg fault bug fixed. When the options DATAFILE = 1, W = 1, and S = 2 were used, version 1.1.1 could potentially crash. Version 1.1.2 corrects this bug. The only change to the manual is to include the above information about version 1.1.2.

New in version 1.1.1, posted October 10, 2007

-BUG FIX. Version 1.1 mistakenly printed G values when it was specified that G' should be printed. This bug did not affect H' and has been corrected.
-When double-clicking on the CLUMPP executable in Windows, the command window will no longer close after the program finishes.
-A newline character has been added at the end of the outfile.

New in version 1.1, posted May 1, 2007

-Two choices of statistic are offered for calculating similarities between runs (the S option)
-There is now an option to print random input orders of runs

For earlier versions of CLUMPP send email to Mattias Jakobsson