Rosenberg lab at Stanford University

Rosenberg lab research topics 2005-present

Classified by biological topics

Gene genealogies, the coalescent, and evolutionary trees
      Allele and haplotype frequencies [134] [61] [57] [49]
      Ancestral configurations [161] [152]
      Coalescence times [198] [195] [194] [170] [166] [154] [100] [89] [88] [80]
      Coalescent histories [196] [176] [164] [160] [142] [135] [111] [68] [41]
      Coalescent simulation [154] [140] [100] [89] [88] [72] [61] [60] [57] [48] [45] [42]
      Consistency of species tree inference [139] [117] [109] [97] [85] [75] [67] [59] [47] [30]
      Deep coalescence cost [118] [117] [103] [75]
      Divergence model [106] [92] [89] [88] [78] [39] [36]
      Hybridization [150] [144]
      Inference [90]
      Migration [170]
      Monophyly, paraphyly, polyphyly [172] [141]
      Multispecies coalescent [179] [172] [143] [141] [140] [109] [97] [96] [90] [89] [88] [85]
            [75] [59] [58] [47] [30]
      Neighbor-joining [162] [117] [99]
      Number of lineages [116] [42]
      Phylogenetic diversity [136] [108]
      Ranked labeled trees [123] [117] [97] [85]
      Ranked unlabeled trees [186]
      Rooted triples [139] [117] [67] [59]
      Splits [143]
      Tree metrics [186]
      Tree shape [197] [189] [118] [117] [103] [39] [36] [32] [29]
      Unlabeled trees [189]
      X and autosomes [195] [54]
Human population-genetic variation
      Admixed populations [187] [184] [151] [147] [146] [137] [133] [124] [122] [120] [99] [82] [79]
      Ancient DNA [147] [146]
      Balancing selection [157] [124] [76]
      Community resources
            HapMap [91] [73] [55] [50] [34]
            [HGDP-CEPH panel [188] [185] [174] [169] [158] [149] [148] [138] [105] [104] [94] [91] [84]
                  [78] [74] [64] [61] [46] [34] [28] [26]
      Consanguinity [144] [119]
      Forensic genetics [185] [159] [148] [138]
      Groups of populations
            Africa [102] [83]
            African Americans [133]
            Cape Verde [151]
            Europe [147] [146]
            India [93] [50] [35]
            Jewish [180] [166] [144] [114] [113] [112] [63]
            Native Americans [120] [95] [81] [71] [57] [44] [37]
            Worldwide [188] [174] [138] [125] [105] [104] [94] [91] [84] [78] [74] [66] [64] [61] [46] [34]
                  [28] [26]
      Identity by descent [195] [194] [166] [114]
      Languages and genes [151] [125] [44]
      Neanderthal admixture [173] [61] [42]
      Out of Africa [188] [131] [119] [105] [104] [91] [84] [83] [80] [78] [61] [53] [34] [26]
      Population structure [188] [185] [180] [174] [170] [165] [156] [149] [138] [132] [129] [114] [104]
                  [102] [91] [84] [81] [73] [66] [63] [46] [44] [35] [28] [26]
      Quantitative genetics [163] [132] [129]
      Runs of homozygosity [194] [166] [144] [107] [105] [91]
      Selective sweeps; natural selection [163] [157] [134] [127]
      Serial founder model [188] [105] [104] [91] [84] [80] [61] [46] [26]
      Spatial variation [125] [114] [104] [100] [94] [91] [81] [66] [61] [46] [28] [26]
      Types of variation
            Copy-number [66] [46]
            Exomes [105]
            Haplotypes [169] [127] [86] [83] [57] [46] [34]
            Idiolectal [151]
            Microsatellites [188] [187] [185] [159] [158] [148] [138] [125] [113] [104] [95] [93] [84]
                  [81] [78] [74] [64] [63] [57] [44] [37] [35] [28] [26]
            Next-generation sequence [150]
            Phenotypic [163] [132] [129]
            Phonemes [125]
            SNPs [182] [180] [175] [174] [166] [165] [159] [151] [149] [148] [120] [114] [94] [91] [73] [65]
                  [50] [46] [34]
      X chromosome [184] [147] [146] [137] [133] [74] [54]
      Y chromosome [113] [93]
Mathematical epidemiology models [183] [173]
Molecular ecology, genetic variation, and population biology in non-human organisms
      Atlantic salmon (Salmo salar) [165]
      Arabidopsis thaliana [174] [49]
      California red-legged frog (Rana draytonii) [167]
      Carp [38]
      Drosophila [127]
      Maize [172] [141]
      New Zealand native foxglove (Ourisia) [90]
      North American pines [117]
      North American wolves [165] [70]
      Rats [190]
      Sky island birds of genus Sholicola [170]
      Strawberries (Fragaria) [150]
      Tigers [170]
Population genetics of human disease-gene mapping
      Diverse populations [131] [69]
      Genome-wide association [131] [110] [69] [62] [55]
      Genotype imputation [136] [110] [108] [106] [95] [92] [91] [83] [62] [55]
      Polygenic scores [163]
      Population structure [110] [31]
      Rare recessive diseases [105] [91]
      Replication [110] [60]
      Tag SNPs [110] [51] [50] [34]
Theoretical population genetics and population genetics concepts
      Admixture [193] [187] [184] [162] [151] [137] [133] [122] [99] [82] [79]
      Allele age [72] [57]
      Ancestral lineages [91] [90] [42] [39]
      Assortative mating [193] [184]
      Frequency of the most frequent allele [169] [165] [149] [127] [102] [87] [52]
      Gene drives [192]
      Gene duplication [45]
      Heterozygosity and homozygosity [187] [178] [158] [138] [127] [102] [87] [80] [74] [70] [61] [56]
            [52] [46]
      Inbreeding [144] [137] [119] [95]
      Linkage disequilibrium [175] [169] [159] [148] [110] [61] [55] [51] [46] [40]
      Ploidy [150] [74]
      Population structure [182] [169] [165] [163] [149] [132] [129] [102] [95] [54] [39] [31]
      Private alleles [78] [57] [53]
      Relatedness [185] [159] [119] [107] [74] [73] [70] [56] [33]
      Selection
            Balancing selection [157] [124] [76]
            Positive selection [157] [134] [127] [57] [48] [46]
            Purifying selection [157] [105]
      Time to the most recent common ancestor [198] [195] [194] [170] [166] [154]

Classified by type of computational, mathematical, and statistical topics

Analysis of variation [163]
Bayesian and approximate Bayesian inference [167] [124] [96] [86] [76] [49] [46]
Birth-death process [179] [140]
Clustering and classification [188] [180] [174] [162] [156] [151] [147] [146] [138] [130] [125] [120]
      [117] [114] [94] [91] [86] [84] [73] [65] [63] [49] [46] [44] [43] [38] [35] [28] [27]
Coalescent simulation [179] [154] [144] [140] [134] [100] [72] [61] [60] [57] [48] [45] [42]
Coalescent theory [198] [195] [194] [179] [172] [170] [166] [154] [143] [141] [139] [134] [116] [109]
      [106] [97] [92] [89] [88] [85] [80] [78] [75] [59] [58] [54] [47] [45] [42] [39] [36] [32] [30]
Combinatorial identities [135] [129] [111] [68] [41] [29]
Combinatorial optimization [130] [43] [27]
Consistency of estimators [109] [99] [67] [59] [47] [30]
Contingency tables and association [175] [110] [62] [51] [40] [31]
Differential equation models [183] [173]
Discrete geometry [186]
Estimation with the coalescent [57] [49] [42] [34]
Expectation-maximization algorithm [95]
Fundamental properties of population-genetic statistics [178] [175] [169] [165] [158] [149] [138]
      [127] [102] [87] [79] [52] [51] [40] [31]
Greedy algorithms [108] [43] [27]
Imputation [167] [159] [148] [136] [108] [106] [95] [92] [83] [69] [62] [55]
Inequalities [189] [187] [182] [178] [169] [165] [158] [149] [143] [132] [129] [127] [109] [103] [102]
      [87] [79] [75] [52]
Linear algebra [193] [187]
Maximum likelihood [167] [95] [90] [79] [67] [42]
Moment estimation [74] [70] [56]
Multivariate analysis [156] [148] [125] [117] [114] [100] [94] [73] [66] [63] [46]
Network theory [174] [170]
Pedigree analysis [74] [73] [70] [56] [33]
Phylogenetic combinatorics [197] [196] [189] [176] [164] [162] [161] [160] [152] [142] [135] [123]
      [118] [111] [109] [103] [97] [89] [88] [85] [68] [59] [47] [41] [36] [29]
Polynomials [47] [30]
Rarefaction [53] [46] [44] [34]
Recursions [193] [192] [189] [184] [164] [162] [161] [152] [137] [135] [133] [122] [111] [82] [68]
      [41] [39]
Sampling theory [74] [53] [40] [36]
Statistical testing [62] [36]

Classified by primary type of article

Book reviews [71]
Commentaries [163]
Comments on published papers [171] [156] [137] [107]
Data analysis [190] [180] [151] [150] [147] [146] [144] [138] [125] [120] [119] [117] [105] [104]
      [94] [93] [91] [83] [81] [77] [73] [72] [70] [66] [65] [64] [63] [62] [57] [55] [50] [49] [48] [46] [44]
      [38] [37] [35] [34] [33] [28] [26]
Editorials [191] [177] [168] [153] [128] [126] [115] [101]
Introductions to edited collections [181] [112] [98]
Mathematics and theory [198] [197] [196] [195] [194] [193] [192] [189] [187] [184] [183] [182] [179]
      [178] [176] [175] [173] [172] [170] [169] [166] [165] [164] [162] [161] [160] [158] [154] [152]
      [149] [143] [142] [141] [139] [135] [133] [132] [129] [127] [123] [122] [118] [116] [111] [109]
      [106] [103] [102] [99] [97] [92] [89] [88] [87] [85] [82] [80] [79] [78] [75] [68] [59] [54] [52]
      [51] [47] [45] [41] [40] [39] [31] [30] [29] [25]
Simulation [144] [140] [100] [61] [60]
Statistical methodology [186] [185] [174] [167] [159] [148] [136] [134] [124] [108] [96] [95] [90]
      [76] [74] [67] [56] [42] [36] [27]
Review articles [188] [157] [131] [110] [84] [69] [58] [32]
Software notes [130] [86] [53] [43]