MonophylerMonophyler computes the probability of monophyly of a specified set of gene lineages conditional on a species tree. Monophyler uses the coalescent together with an arbitrary species tree to determine the monophyly probability for a set of lineages or the reciprocal monophyly probability for a pair of sets of lineages. It can also accommodate various computations involving three or four lineage sets.
package] (you will be directed first to a
registration page and we would very much appreciate if you register)
To use the UNIX versions, unzip and untar the files in an appropriate directory using
gunzip filename.tar.gz; tar xvf filename.tarwhere "filename.tar.gz" is the downloaded file. Run the program in UNIX by typing
./monophyler_linux.sh inputfile.txtor simply
./monophyler_linux.shto start the graphical user interface.
Please send comments or problems with Monophyler to Rohan Mehta.
Software historyApril 5, 2016 - upload of peer review version of the software
July 26, 2016 - upload of version 1.0 of the software
December 6, 2017 - upload of new version of the manual with trivial changes; replacement of the linux version to include a missing library